Depth-time plot — plotDT • remora

Creates an interactive depth-time plot from a sensor dataset from a specified IMOS mooring, with an option to overlay species detection records from tracking dataset from closest receiver

plotDT(
  moorData,
  moorName,
  dateStart = NULL,
  dateEnd = NULL,
  varName = c("temperature", "vcur", "ucur", "psal"),
  trackingData = NULL,
  speciesID,
  IDtype = "CAAB",
  detStart = NULL,
  detEnd = NULL
)

Arguments

moorData: Dataframe containing the sensor data from a single IMOS mooring.
moorName: Character string specifying mooring name using IMOS ID code.
dateStart: Optional character string of start date of date range of mooring data to plot, as "YYYY-MM-DD"
dateEnd: Optional character string of end date of date range of mooring data to plot, as "YYYY-MM-DD"
varName: Character string of mooring sensor variable of interest. Can be "temperature", "ucur" for meridional (u) velocity, "vcur" for zonal (v) velocity
trackingData: Dataframe containing tag detections data to plot. Takes output from getDistance() function as input. Set as NULL for a base plot with no detections.
speciesID: Character string describing species or tag identifier.
IDtype: Character string describing type of species or tag identifier. Can be CAAB code, tag ID, common name or scientific name. Must match identifier in detections dataset.
detStart: Optional character string of start date of date range of detections data to overlay on depth-time plot.
detEnd: Optional character string of end date of date range of detections data to overlay on depth-time plot.